Set idents for top abundant clones in Seurat object, get ready for highlight the top abundant clones in UMAP.

Source: R/Echidna_other_functions.R

Set idents for top abundant clones in Seurat object, get ready for highlight the top abundant clones in UMAP.

umap.top.highlight(gex, all.contig.annotations, top.n)

Arguments

gex

output from get.umap function.

all.contig.annotations

The output dataframe all_contig_annotations from simulation.

top.n

The top n abundant clones to be shown in the plot. If missing, all clones will be shown.

Value

a Seurat object ready for highlight the top abundant clones in UMAP