Get clone network igraphs without empty mode. Empty node represents the 'extincted' sequences, that are not in any living cell but once existed.

Source: R/Echidna_other_functions.R

Get clone network igraphs without empty mode. Empty node represents the 'extincted' sequences, that are not in any living cell but once existed.

no.empty.node(history, igraph.index)

Arguments

history

The dataframe 'history' from the simulation output.

igraph.index

The list 'igraph.index' from the simulation output.

empty.node

If TRUE, there will be empty node in igraph. if FALSE, the empty node will be deleted.

Value

a list of clone network igraphs without empty mode.