Get information about the clonotype counts grouped by isotype.

Return

clonofreq.isotype.data(all.contig.annotations, top.n)

Arguments

all.contig.annotations: The output dataframe all_contig_annotation from function simulate.repertoire.
top.n: The top n abundant clones to be shown in the plot. If missing, all clones will be shown.

dataframes containing the top n abundant clonotypes and their frequency and isotype information for further processing.