Infer germline from the desired software/caller

Source: R/VDJ_germline.R

Function to infer the germline from the tree

VDJ_germline(VDJ, germlines.from, VDJ.only)

Arguments

VDJ

VDJ dataframe obtained after calling VDJ_call_MIXCR or any other germline you want to use

germlines.from

MIXCR or any other germline caller - default: MIXCR

VDJ.only

boolean - if T, only Heavy Chain (VDJ) germline will be inferred

Value

VDJ with the updated germline

Examples

if (FALSE) {
VDJ_germline(VDJ, germlines.from='MIXCR',
VDJ.only=T)
}