Scaling of the spatial parameters to be able to express the gene expression on the spatial image.

Spatial_scaling_parameters(vgm_spatial, GEX.out.directory.list, sample_names)

Arguments

vgm_spatial: List containing the output of VDJ_GEX_matrix function from Platypus with at least the gene expression data and the addition of spatial parameters: image, scalefacor, tissue, cluster and matrix.
GEX.out.directory.list: Path to the filtered feature bc matrix data.
sample_names: Character vector containing the name of the sample.

Value

Returns a list containing all parameters to scale the data on the spatial image. List element [[1]]: images_cl. List element [[2]]: height of the image. List element [[3]]: width of the image. List element [[4]]: grobs. List element [[5]]: images_tibble. List element [[6]]: scales. List element [[7]]: cluster. List element [[8]]: bcs. List element [[9]]: matrix. List element [[10]]: bcs_merge.

Examples

if (FALSE) {
scaling_parameters<-Spatial_scaling_parameters(vgm_spatial = vgm_spatial,
GEX.out.directory.list = GEX.out.directory.list,
sample_names = sample_names)
}