CDR3 query function for PlatypusDB

Source: R/PlatypusDB_find_CDR3s.R

Queries for the occurrence of CDR3 sequences in public datasets on PlatypusDB.

PlatypusDB_find_CDR3s(VDJ.cdr3s.aa, VJ.cdr3s.aa, projects.to.search)

Arguments

VDJ.cdr3s.aa

Character A VDJ CDR3s amino acid sequence to search for

VJ.cdr3s.aa

Character A VJ CDR3s amino acid sequence to search for

projects.to.search

Optional character vector. Defaults to "ALL". Names of projects to search within.

Value

A list of subsets of VDJ matrices from projects containing the query VDJ CDR3 (out[[1]]), the VJ CDR3 (out[[2]]) and cells containing both the query VDJ and VJ CDR3s (out[[3]])

Examples

if (FALSE) {

public_clones <- PlatypusDB_find_CDR3s(VDJ.cdr3s.aa = "CMRYGNYWYFDVW"
, VJ.cdr3s.aa = "CLQHGESPFTF", projects.to.search = "ALL")

}