Scatter plot for coexpression of two selected genes

Plots a composite figure showing single marker expression as histograms and coexpression as a scatterplot.

GEX_scatter_coexpression(GEX, gene.1, gene.2, color.theme)

Arguments

GEX

GEX seurat object generated with VDJ_GEX_matrix

gene.1

Character. Name of a gene in rownames(VDJ.matrix)

gene.2

Character. Name of a gene in rownames(VDJ.matrix)

color.theme

Character. A color to use for the composite plot

Value

Returns a gridplot showing coexpression scatterplot as well as histograms of gene.1 and gene.2

Examples

gene1 <- "CD24A"
gene2 <- "CD83"
GEX_scatter_coexpression(GEX = Platypus::small_vgm[[2]], gene1,gene2)