See AntibodyForests function for complete documentation
if (FALSE) {
AntibodyForests(VDJ, sequence.type='VDJ.VJ.nt.trimmed',
include.germline=T, network.algorithm='tree',
resolve.ties=c('close.germline.distance', 'max.expansion'),
node.features='OVA_binder', expand.intermediates=T, network.level='intraclonal')
}